PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0052s0067.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 157aa    MW: 17435.7 Da    PI: 7.319
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0052s0067.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.4e-201567156
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         s+y+G+r+++ +g+++AeIrdps ng  +r++lg+f taeeAa+a+++a+ +++g+
  Kalax.0052s0067.1.p 15 SRYRGIRRRP-WGKFAAEIRDPSRNG--ARVWLGTFETAEEAARAYDRAAYAFRGH 67
                         79********.**********98887..*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-141567IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-241575IPR016177DNA-binding domain
CDDcd000181.72E-191575No hitNo description
Gene3DG3DSA:3.30.730.101.4E-311675IPR001471AP2/ERF domain
SMARTSM003801.8E-351680IPR001471AP2/ERF domain
PROSITE profilePS5103224.9871674IPR001471AP2/ERF domain
PRINTSPR003679.6E-121728IPR001471AP2/ERF domain
PRINTSPR003679.6E-124056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MDQGRGGGRQ GSSESRYRGI RRRPWGKFAA EIRDPSRNGA RVWLGTFETA EEAARAYDRA  60
AYAFRGHLAI LNFPNEHHYQ SQEGDHGRPS SRRSSGNNNI SSSSSPSSSS AMNHHHHPEN  120
YSSSQTGPDG EVFEFEYLDN TLLEDLLGYQ GQGKNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-281774663ATERF1
3gcc_A1e-281774663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085331.11e-46PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC52e-41ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A067JUN22e-46A0A067JUN2_JATCU; Uncharacterized protein
STRINGPOPTR_0005s24450.13e-43(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-26ERF family protein